CEU60

Microarray data

Link to ArrayExpress E-MTAB-198

Normalized data

• RNASEQ60_array_rep_expr.txt.gz

Genotype data

• RNASEQ60_array_rep_snps.full.txt.gz

Sequence data

Link to ArrayExpress E-MTAB-197

FASTQ data

• Fastq E-MTAB-197 (1 of 3, 15Gb)
• Fastq E-MTAB-197 (2 of 3, 15Gb)
• Fastq E-MTAB-197 (3 of 3, 20Gb)

Sample information

Genotype data

• RNASEQ60_snps.full.txt.gz

Association data: Data for SNP by RNA-Seq Spearman associations

Example line

SNP_label SNP_ID GENE_Label GENE_ID SNP_chromosome GENE_chromosome SNP_location GENE_location Distance rvalue pvalue -log10(pvalue)

rs2254669 - ENSE00001066442_ENSG00000131584 ENSE00001066442 1 1 1995968 1233132 762836 0.449 0.000319886288769 3.4950 0.05

Column 1: SNP ID, Column 3: Exon+Gene ID from EnsEMBL 54, Column 5+7: Gene location, Column 6+8: SNP location, Column 10: Rho value, Column 11: P-value, Column 12: -log10(P-value), Column 13: Permutation significance

SAM files: Mapping to hg18

all_sam_data.tar (50GB!!! files are gzipped within tar archive)

Contact: stephen.montgomery [at] unige.ch or emmanouil.dermitzakis [at] unige.ch